| Rank | Team | Conference | Wins | Losses | Win Pct |
|---|
| 1 | James Madison | Sun Belt | 35 | 10 | 0.778 |
| 2 | Boise State | Mountain West | 112 | 39 | 0.742 |
| 3 | Memphis | American Athletic | 107 | 44 | 0.709 |
| 4 | App State | Sun Belt | 104 | 46 | 0.693 |
| 5 | Liberty | Conference USA | 65 | 31 | 0.677 |
| 6 | Cincinnati | Big 12 | 77 | 37 | 0.675 |
| 7 | Toledo | Mid-American | 96 | 50 | 0.658 |
| 8 | Jacksonville State | Conference USA | 23 | 12 | 0.657 |
| 9 | UCF | Big 12 | 74 | 40 | 0.649 |
| 10 | Houston | Big 12 | 72 | 40 | 0.643 |
| 11 | Marshall | Sun Belt | 94 | 54 | 0.635 |
| 12 | San Diego State | Mountain West | 93 | 54 | 0.633 |
| 13 | Missouri State | Conference USA | 5 | 3 | 0.625 |
| 14 | Ohio | Mid-American | 89 | 54 | 0.622 |
| 15 | Air Force | Mountain West | 88 | 54 | 0.620 |
| 16 | Western Kentucky | Conference USA | 95 | 60 | 0.613 |
| 17 | Louisiana | Sun Belt | 90 | 62 | 0.592 |
| 18 | Army | American Athletic | 86 | 61 | 0.585 |
| 19 | Troy | Sun Belt | 86 | 61 | 0.585 |
| 20 | Coastal Carolina | Sun Belt | 63 | 45 | 0.583 |
| 21 | Western Michigan | Mid-American | 81 | 62 | 0.566 |
| 22 | Navy | American Athletic | 82 | 64 | 0.562 |
| 23 | UAB | American Athletic | 66 | 54 | 0.550 |
| 24 | Fresno State | Mountain West | 80 | 66 | 0.548 |
| 25 | Utah State | Mountain West | 75 | 69 | 0.521 |
| 26 | Georgia Southern | Sun Belt | 77 | 71 | 0.520 |
| 27 | UTSA | American Athletic | 76 | 71 | 0.517 |
| 28 | Louisiana Tech | Conference USA | 76 | 71 | 0.517 |
| 29 | SMU | ACC | 63 | 60 | 0.512 |
| 30 | Arkansas State | Sun Belt | 75 | 72 | 0.510 |
| 31 | Northern Illinois | Mid-American | 74 | 72 | 0.507 |
| 32 | Tulane | American Athletic | 75 | 73 | 0.507 |
| 33 | Buffalo | Mid-American | 70 | 70 | 0.500 |
| 34 | Delaware | Conference USA | 4 | 4 | 0.500 |
| 35 | Miami (OH) | Mid-American | 70 | 71 | 0.496 |
| 36 | South Florida | American Athletic | 69 | 74 | 0.483 |
| 37 | Wyoming | Mountain West | 68 | 74 | 0.479 |
| 38 | Central Michigan | Mid-American | 67 | 75 | 0.472 |
| 39 | Temple | American Athletic | 67 | 76 | 0.469 |
| 40 | North Texas | American Athletic | 68 | 79 | 0.463 |
| 41 | Middle Tennessee | Conference USA | 66 | 78 | 0.458 |
| 42 | Southern Miss | Sun Belt | 63 | 80 | 0.441 |
| 43 | Colorado State | Mountain West | 60 | 77 | 0.438 |
| 44 | Hawai'i | Mountain West | 65 | 85 | 0.433 |
| 45 | Florida Atlantic | American Athletic | 61 | 80 | 0.433 |
| 46 | Old Dominion | Sun Belt | 57 | 75 | 0.432 |
| 47 | South Alabama | Sun Belt | 61 | 84 | 0.421 |
| 48 | East Carolina | American Athletic | 59 | 81 | 0.421 |
| 49 | Nevada | Mountain West | 60 | 83 | 0.420 |
| 50 | Eastern Michigan | Mid-American | 59 | 82 | 0.418 |
| 51 | San José State | Mountain West | 57 | 83 | 0.407 |
| 52 | Bowling Green | Mid-American | 57 | 84 | 0.404 |
| 53 | Kennesaw State | Conference USA | 8 | 12 | 0.400 |
| 54 | UNLV | Mountain West | 55 | 84 | 0.396 |
| 55 | Sam Houston | Conference USA | 13 | 20 | 0.394 |
| 56 | Georgia State | Sun Belt | 55 | 87 | 0.387 |
| 57 | Tulsa | American Athletic | 54 | 86 | 0.386 |
| 58 | Florida International | Conference USA | 52 | 84 | 0.382 |
| 59 | Ball State | Mid-American | 52 | 86 | 0.377 |
| 60 | Idaho | Big Sky | 18 | 30 | 0.375 |
| 61 | New Mexico | Mountain West | 50 | 88 | 0.362 |
| 62 | Texas State | Sun Belt | 49 | 93 | 0.345 |
| 63 | Rice | American Athletic | 47 | 91 | 0.341 |
| 64 | New Mexico State | Conference USA | 46 | 89 | 0.341 |
| 65 | UConn | FBS Independents | 42 | 90 | 0.318 |
| 66 | Akron | Mid-American | 44 | 95 | 0.317 |
| 67 | Charlotte | American Athletic | 38 | 85 | 0.309 |
| 68 | UL Monroe | Sun Belt | 43 | 97 | 0.307 |
| 69 | UTEP | Conference USA | 41 | 97 | 0.297 |
| 70 | Kent State | Mid-American | 38 | 97 | 0.281 |
| 71 | Massachusetts | Mid-American | 24 | 109 | 0.180 |