| Rank | Team | Conference | Wins | Losses | Win Pct |
|---|
| 1 | James Madison | Sun Belt | 40 | 11 | 0.784 |
| 2 | Boise State | Mountain West | 115 | 41 | 0.737 |
| 3 | Memphis | American Athletic | 107 | 48 | 0.690 |
| 4 | App State | Sun Belt | 105 | 49 | 0.682 |
| 5 | Cincinnati | Big 12 | 77 | 37 | 0.675 |
| 6 | Toledo | Mid-American | 99 | 51 | 0.660 |
| 7 | Jacksonville State | Conference USA | 27 | 14 | 0.659 |
| 8 | Liberty | Conference USA | 65 | 35 | 0.650 |
| 9 | UCF | Big 12 | 74 | 40 | 0.649 |
| 10 | Houston | Big 12 | 72 | 40 | 0.643 |
| 11 | Ohio | Mid-American | 92 | 55 | 0.626 |
| 12 | Marshall | Sun Belt | 95 | 57 | 0.625 |
| 13 | San Diego State | Mountain West | 95 | 57 | 0.625 |
| 14 | Air Force | Mountain West | 90 | 56 | 0.616 |
| 15 | Western Kentucky | Conference USA | 97 | 62 | 0.610 |
| 16 | Louisiana | Sun Belt | 93 | 63 | 0.596 |
| 17 | Army | American Athletic | 89 | 63 | 0.586 |
| 18 | Western Michigan | Mid-American | 86 | 62 | 0.581 |
| 19 | Troy | Sun Belt | 88 | 64 | 0.579 |
| 20 | Navy | American Athletic | 86 | 65 | 0.570 |
| 21 | Coastal Carolina | Sun Belt | 64 | 49 | 0.566 |
| 22 | Fresno State | Mountain West | 83 | 67 | 0.553 |
| 23 | UAB | American Athletic | 67 | 57 | 0.540 |
| 24 | Delaware | Conference USA | 7 | 6 | 0.538 |
| 25 | Missouri State | Conference USA | 7 | 6 | 0.538 |
| 26 | Georgia Southern | Sun Belt | 80 | 72 | 0.526 |
| 27 | UTSA | American Athletic | 79 | 72 | 0.523 |
| 28 | Louisiana Tech | Conference USA | 79 | 73 | 0.520 |
| 29 | Tulane | American Athletic | 80 | 74 | 0.519 |
| 30 | Utah State | Mountain West | 77 | 72 | 0.517 |
| 31 | SMU | ACC | 63 | 60 | 0.512 |
| 32 | Arkansas State | Sun Belt | 77 | 74 | 0.510 |
| 33 | Northern Illinois | Mid-American | 75 | 74 | 0.503 |
| 34 | Miami (OH) | Mid-American | 72 | 74 | 0.493 |
| 35 | Buffalo | Mid-American | 70 | 73 | 0.490 |
| 36 | South Florida | American Athletic | 71 | 76 | 0.483 |
| 37 | North Texas | American Athletic | 72 | 80 | 0.474 |
| 38 | Central Michigan | Mid-American | 69 | 77 | 0.473 |
| 39 | Wyoming | Mountain West | 68 | 77 | 0.469 |
| 40 | Kennesaw State | Conference USA | 12 | 14 | 0.462 |
| 41 | Temple | American Athletic | 67 | 79 | 0.459 |
| 42 | Middle Tennessee | Conference USA | 68 | 80 | 0.459 |
| 43 | Old Dominion | Sun Belt | 61 | 75 | 0.449 |
| 44 | Hawai'i | Mountain West | 68 | 86 | 0.442 |
| 45 | East Carolina | American Athletic | 63 | 82 | 0.434 |
| 46 | Southern Miss | Sun Belt | 64 | 84 | 0.432 |
| 47 | Florida Atlantic | American Athletic | 62 | 83 | 0.428 |
| 48 | Colorado State | Mountain West | 60 | 81 | 0.426 |
| 49 | South Alabama | Sun Belt | 63 | 85 | 0.426 |
| 50 | Eastern Michigan | Mid-American | 61 | 83 | 0.424 |
| 51 | Nevada | Mountain West | 62 | 85 | 0.422 |
| 52 | UNLV | Mountain West | 59 | 86 | 0.407 |
| 53 | Sam Houston | Conference USA | 15 | 22 | 0.405 |
| 54 | Bowling Green | Mid-American | 58 | 86 | 0.403 |
| 55 | Florida International | Conference USA | 56 | 85 | 0.397 |
| 56 | San José State | Mountain West | 57 | 87 | 0.396 |
| 57 | Tulsa | American Athletic | 56 | 88 | 0.389 |
| 58 | Georgia State | Sun Belt | 55 | 91 | 0.377 |
| 59 | Idaho | Big Sky | 18 | 30 | 0.375 |
| 60 | New Mexico | Mountain West | 53 | 89 | 0.373 |
| 61 | Ball State | Mid-American | 52 | 89 | 0.369 |
| 62 | Texas State | Sun Belt | 53 | 94 | 0.361 |
| 63 | Rice | American Athletic | 48 | 94 | 0.338 |
| 64 | New Mexico State | Conference USA | 47 | 92 | 0.338 |
| 65 | UConn | FBS Independents | 45 | 91 | 0.331 |
| 66 | Akron | Mid-American | 45 | 96 | 0.319 |
| 67 | UL Monroe | Sun Belt | 43 | 100 | 0.301 |
| 68 | Charlotte | American Athletic | 38 | 89 | 0.299 |
| 69 | Kent State | Mid-American | 40 | 98 | 0.290 |
| 70 | UTEP | Conference USA | 41 | 101 | 0.289 |
| 71 | Massachusetts | Mid-American | 24 | 112 | 0.176 |