| Rank | Team | Conference | Wins | Losses | Win Pct |
|---|
| 1 | James Madison | Sun Belt | 37 | 10 | 0.787 |
| 2 | Boise State | Mountain West | 112 | 40 | 0.737 |
| 3 | Missouri State | Conference USA | 7 | 3 | 0.700 |
| 4 | Memphis | American Athletic | 107 | 46 | 0.699 |
| 5 | App State | Sun Belt | 104 | 47 | 0.689 |
| 6 | Jacksonville State | Conference USA | 25 | 12 | 0.676 |
| 7 | Cincinnati | Big 12 | 77 | 37 | 0.675 |
| 8 | Liberty | Conference USA | 65 | 33 | 0.663 |
| 9 | Toledo | Mid-American | 97 | 50 | 0.660 |
| 10 | UCF | Big 12 | 74 | 40 | 0.649 |
| 11 | Houston | Big 12 | 72 | 40 | 0.643 |
| 12 | Marshall | Sun Belt | 95 | 55 | 0.633 |
| 13 | San Diego State | Mountain West | 94 | 55 | 0.631 |
| 14 | Ohio | Mid-American | 90 | 55 | 0.621 |
| 15 | Air Force | Mountain West | 89 | 55 | 0.618 |
| 16 | Western Kentucky | Conference USA | 96 | 60 | 0.615 |
| 17 | Louisiana | Sun Belt | 92 | 62 | 0.597 |
| 18 | Army | American Athletic | 87 | 61 | 0.588 |
| 19 | Coastal Carolina | Sun Belt | 64 | 46 | 0.582 |
| 20 | Troy | Sun Belt | 86 | 62 | 0.581 |
| 21 | Western Michigan | Mid-American | 83 | 62 | 0.572 |
| 22 | Navy | American Athletic | 83 | 65 | 0.561 |
| 23 | Fresno State | Mountain West | 81 | 66 | 0.551 |
| 24 | UAB | American Athletic | 66 | 56 | 0.541 |
| 25 | Georgia Southern | Sun Belt | 78 | 71 | 0.523 |
| 26 | Utah State | Mountain West | 76 | 70 | 0.521 |
| 27 | UTSA | American Athletic | 77 | 71 | 0.520 |
| 28 | Tulane | American Athletic | 77 | 73 | 0.513 |
| 29 | SMU | ACC | 63 | 60 | 0.512 |
| 30 | Louisiana Tech | Conference USA | 76 | 73 | 0.510 |
| 31 | Northern Illinois | Mid-American | 75 | 73 | 0.507 |
| 32 | Arkansas State | Sun Belt | 75 | 74 | 0.503 |
| 33 | Delaware | Conference USA | 5 | 5 | 0.500 |
| 34 | Miami (OH) | Mid-American | 71 | 72 | 0.497 |
| 35 | Buffalo | Mid-American | 70 | 72 | 0.493 |
| 36 | Central Michigan | Mid-American | 69 | 75 | 0.479 |
| 37 | South Florida | American Athletic | 69 | 75 | 0.479 |
| 38 | Wyoming | Mountain West | 68 | 75 | 0.476 |
| 39 | North Texas | American Athletic | 69 | 79 | 0.466 |
| 40 | Temple | American Athletic | 67 | 77 | 0.465 |
| 41 | Middle Tennessee | Conference USA | 66 | 80 | 0.452 |
| 42 | Southern Miss | Sun Belt | 64 | 81 | 0.441 |
| 43 | Hawai'i | Mountain West | 66 | 85 | 0.437 |
| 44 | Old Dominion | Sun Belt | 58 | 75 | 0.436 |
| 45 | Florida Atlantic | American Athletic | 62 | 81 | 0.434 |
| 46 | Colorado State | Mountain West | 60 | 79 | 0.432 |
| 47 | East Carolina | American Athletic | 61 | 81 | 0.430 |
| 48 | Sam Houston | Conference USA | 15 | 20 | 0.429 |
| 49 | Eastern Michigan | Mid-American | 61 | 82 | 0.427 |
| 50 | South Alabama | Sun Belt | 62 | 84 | 0.425 |
| 51 | Nevada | Mountain West | 61 | 84 | 0.421 |
| 52 | Kennesaw State | Conference USA | 9 | 13 | 0.409 |
| 53 | UNLV | Mountain West | 57 | 84 | 0.404 |
| 54 | San José State | Mountain West | 57 | 85 | 0.401 |
| 55 | Bowling Green | Mid-American | 57 | 86 | 0.399 |
| 56 | Florida International | Conference USA | 54 | 84 | 0.391 |
| 57 | Tulsa | American Athletic | 55 | 87 | 0.387 |
| 58 | Georgia State | Sun Belt | 55 | 89 | 0.382 |
| 59 | Idaho | Big Sky | 18 | 30 | 0.375 |
| 60 | Ball State | Mid-American | 52 | 87 | 0.374 |
| 61 | New Mexico | Mountain West | 51 | 88 | 0.367 |
| 62 | Texas State | Sun Belt | 50 | 94 | 0.347 |
| 63 | Rice | American Athletic | 48 | 91 | 0.345 |
| 64 | New Mexico State | Conference USA | 46 | 91 | 0.336 |
| 65 | UConn | FBS Independents | 44 | 90 | 0.328 |
| 66 | Akron | Mid-American | 45 | 96 | 0.319 |
| 67 | UL Monroe | Sun Belt | 43 | 98 | 0.305 |
| 68 | Charlotte | American Athletic | 38 | 87 | 0.304 |
| 69 | UTEP | Conference USA | 41 | 99 | 0.293 |
| 70 | Kent State | Mid-American | 39 | 98 | 0.285 |
| 71 | Massachusetts | Mid-American | 24 | 111 | 0.178 |